Diffusion-limited loop formation of semiflexible polymers: Kramers theory and the intertwined time scales of chain relaxation and closing

We show that Kramers rate theory gives a straightforward, accurate estimate of the closing time $\tau_c$ of a semiflexible polymer that is valid in cases of physical interest. The calculation also reveals how the time scales of chain relaxation and closing are intertwined, illuminating an apparent conflict between two ways of calculating $\tau_c$ in the flexible limit.Comment: Europhys. Lett., 2003 (in press). 8 pages, 3 figures. See also, physics/0101087 for physicist's approach to and the importance of semiflexible polymer looping, in DNA replicatio

Current and fluctuation in a two-state stochastic system under non-adiabatic periodic perturbation

We calculate a current and its fluctuation in a two-state stochastic system under a periodic perturbation. The system could be interpreted as a channel on a cell surface or a single Michaelis-Menten catalyzing enzyme. It has been shown that the periodic perturbation induces so-called pump current, and the pump current and its fluctuation are calculated with the aid of the geometrical phase interpretation. We give a simple calculation recipe for the statistics of the current, especially in a non-adiabatic case. The calculation scheme is based on the non-adiabatic geometrical phase interpretation. Using the Floquet theory, the total current and its fluctuation are calculated, and it is revealed that the average of the current shows a stochastic-resonance-like behavior. In contrast, the fluctuation of the current does not show such behavior.Comment: 7 pages, 1 figur

A Two-Dimensional CA Traffic Model with Dynamic Route Choices Between Residence and Workplace

The Biham, Middleton and Levine (BML) model is extended to describe dynamic route choices between the residence and workplace in cities. The traffic dynamic in the city with a single workplace is studied from the velocity diagram, arrival time probability distribution, destination arrival rate and convergence time. The city with double workplaces is also investigated to compared with a single workplace within the framework of four modes of urban growth. The transitional region is found in the velocity diagrams where the system undergoes a continuous transition from a moving phase to a completely jamming phase. We perform a finite-size scaling analysis of the critical density from a statistical point of view and the order parameter of this jamming transition is estimated. It is also found that statistical properties of urban traffic are greatly influenced by the urban area, workplace area and urban layout.Comment: 18 pages, 13 figure

Robust nodal superconductivity induced by isovalent doping in Ba(Fe1−x_{1-x}Rux_x)2_2As2_2 and BaFe2_2(As1−x_{1-x}Px_x)2_2

We present the ultra-low-temperature heat transport study of iron-based superconductors Ba(Fe$_{1-x}$Ru$_x$)$_2$As$_2$ and BaFe$_2$(As$_{1-x}$P$_x$)$_2$. For optimally doped Ba(Fe$_{0.64}$Ru$_{0.36}$)$_2$As$_2$, a large residual linear term $\kappa_0/T$ at zero field and a $\sqrt{H}$ dependence of $\kappa_0(H)/T$ are observed, which provide strong evidences for nodes in the superconducting gap. This result demonstrates that the isovalent Ru doping can also induce nodal superconductivity, as P does in BaFe$_2$(As$_{0.67}$P$_{0.33}$)$_2$. Furthermore, in underdoped Ba(Fe$_{0.77}$Ru$_{0.23}$)$_2$As$_2$ and heavily underdoped BaFe$_2$(As$_{0.82}$P$_{0.18}$)$_2$, $\kappa_0/T$ manifests similar nodal behavior, which shows the robustness of nodal superconductivity in the underdoped regime and puts constraint on theoretical models.Comment: 5 pages, 4 figures - with two underdoped samples added, this paper supersedes arXiv:1106.541

Symmetries and Lie algebra of the differential-difference Kadomstev-Petviashvili hierarchy

By introducing suitable non-isospectral flows we construct two sets of symmetries for the isospectral differential-difference Kadomstev-Petviashvili hierarchy. The symmetries form an infinite dimensional Lie algebra.Comment: 9 page